Q1: My Window settings are completely scrambled!
  1. Quit HTTP Weazel
  2. Delete "docking.cfg" from the HTTP Weazel directory
  3. Remove section [Docking-Settings] from httpweazel.ini
  4. Start HTTP Weazel
The complete docking stuff will be rewritten soon to prevent such behavior...
 
Q2: HTTP Weazel finished download after first file has been downloaded!
Most probably the first file is in a different directory or on a different server. Select "Follow external links" from project´s properties and limit the search-depth by using the "Only follow external links to certain depth" feature.